Protein ID:

Species:

Genus:

Order:

Win Method:

Regex Method:

HMM Method:

BLAST Method:

WYL Domain:

Node Degree:

Protein Length:

Sequence:

This is a sequence similarty network. Each node represents a protein. An edge/line joining two nodes represents shared sequence similarity between the two proteins. Proteins are coloured according to their genus.

Click on a protein/node to view information about it.

The network can be filtered to hide/show particular proteins (e.g. by Genus or Order) using the buttons on the right.

Usage

1. Left to right:
   • Zoom in
   • Zoom out
   • Center view on network
2. Toggle Edges: hides/shows all edges in the network. Hiding edges improves performance
3. Toggle Labels: hides/shows labels for all nodes in the network. Hiding labels improves performance
4. Filter box: type a query here to filter by Protein ID, Species, Genus or Order

Filter by method/feature

For RxLR effectors, proteins can also be filtered by the method that identified them or their features using the checkboxes.

• Win method: show proteins that were identified via Win method
• Regex method: show proteins that were identified via Regex method
• HMM method: show proteins that were identified via HMM method
• BLAST method: show proteins that were identified as homologous to reference RxLRs via BLAST
• WYL domain: show proteins that have one or more WYL domains